Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000540s00023669.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G19130.1	5.00E-98	S-locus lectin protein kinase family protein
NR	XP_003599324.1	0	Somatic embryogenesis receptor kinase [Medicago truncatula]
COG	YP_001958461.1	5.00E-25	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|P17801\|KPRO_MAIZE	0	Putative receptor protein kinase ZmPK1 (Precursor)
trEMBL	tr\|G7J0Q7\|G7J0Q7_MEDTR	0	Serine/Threonine kinase, plant-type protein {ECO:0000313\|EMBL:AES69575.1}

Sequence

Transcript Sequence

>Glyur000540s00023669.1
ATGATGCGANTGGCCTCTAATTCTTTCTTGATTACTCTCCTCTTTTTGCTTTTTCATTTTCAACACTCCTCTTCCTCATTCTCACTCTCCGTGGAGAAGCACGAAGAAGACGTAATAGTCTCACCCAACAACATATTCACCGCGGGTTTTTATCCCGTAGGNGACAACGCTTATTCCTTCGCCATATGGTTCACCCAAGATGCCACCCTTGTTTGGATGGCAAACCGGGACCAACCGGTGAACCGAAAACGCTCCACCCTCTCCCTTCTCAAAACCGGTAACCTCGTCTTATATGACGCAGGCCAGTCCAACGTGTGGTCCACAAACACCGCCTCAGAAAAACCACTTGAACTGGTTTTGCACAGCAACGGGAACCTCGTTCTGCGTGAACAGAGCAACAATGGTTCTGTTCTTTGGCAGAGCTTCGATTTTCCAACGGACACGCTACTTCCGGAGCAAAGTCTCACGAGGTACACGAAGCTTGTTTCTTCCAGAAGCGAGGGGAACTATTCCTCTGGTTTCTACAAGCTCTTCTTCGACAACGACAACGTCCTCCGTCTTCTCTACGAAGGCCCTCACGTTTCCAGCGTGTACTGGCCNNNTCCNTGGCTTGTGAGCTGGGAAGCTGGTAGNTCCACGTACAACAGCAGCAGGGTTGCAACACTAGATCTTTTGGGGAACTTCAGTTCTTCAGANGACTTCACTTTAACGGCAAGTGATTATGGGACAGTGCTCCAACGAAGATTGACACTTGATCACGATGGTAATGTTCGTGTTTATAGCCGGAAATTAGATATTAATGGAGATGAGAAGTGGTCAGTCTCAGTGCAAGTCCACCAACAACCATGTCAGATTCATGGGATTTGTGGGCCCAATAGCACTTGCAGTTACNACCCAAGAAGCGGTAGAAAGTGTTCGTGTCTTCCAGGCTATAGCAGGCTCGATAATCAAGACTGGTCTCAGGGGTGCAAACCAACCTTCCAACTTTCATGCAAGACAGAGTCGAGATTCCAAAACTTACCCCGTGTAGAGTTTTATGGTTACGACTTTGGCTACTTTCAAAATTACACCTTTAAACAGTGTAAGCATTTGTGCTTGCGGCTGTGCAAATGCGTAGGCTTCCAGTACCGCTTTCAGGTGGACAAGCATGTCTATAGTTGTTACCCAAAGACGCAATTGCTAAATGGCCATCACTCACCAAATTTCAATGCATCACTCTTCTTGCGATTGCCCAAAAGCAGTGTTGTTGCTTTTAATTCCATTCATGAGAACCCCGTGCAGGACGATAACGGATTGGCTTGTTCCAGAAATATTGGAGAAAAACAACTGGAGAGATCATACGTCAAAGCAAACAAAAANGGATCGGTGAAGTTCATGCGTTGGTTTGCGAGTGGCTTGGGAGGAATTGAGGTCGTGAGCTTCTTTATGGTGTGGTGTTTCCTACTTAGGAAGAATAGGAAACACTTTGTTGCAGCAGACACACATGCAACGGGATTCAGAAAATTCAGTTACTCAGAACTGAAACAAGCCACGGAATATTTCAGTCAAGAGATTGGAAGGGGTGCTGGTGGAATTGTCTATAAGGGAACATTATCAGATAATCGCGTTGCAGCAATAAAGCAACTACATGACGCAAACCAATTGGAAGGAGAGAGTGAGTTCCTTGCTGAAGTGAGCATCATTGGAAGGCTTAACCACATGAACTTAATTGGCATGTGGGGGTACTGTGTAGAGGGCNAACACAGGTTGCTGGTTTATGAGTACNTGGAAAATGGTTCTTTAGCTGAGAGTCTCAAATCAAGCGCTCTTGATTGGGGTAAGAGGTATAACATTGCTATTGGAACAGCAAGGGGACTGGCATATCTACATGAAGAATGCTTGGAGTGGATCTTGCATTGTGATATAAAGCCCCAAAACATACTTCTTGACTGTGATTTTCAACCCAAGGTGGCGGATTTTGGCTTGTCCAAGCTTCTGCATAGGAACAATGCCAACAATTCAAACTTCTCAAGGATAAGAGGGACAAGGGGATACATGGCACCGGAATGGATTTTCAACTTGCCAATCACTTCCAAGGTGGATGTTTATAGCTATGGAATTGTTGTCCTGGAGTTGATAACTGGAAGGAGCCCAATGACGGGTATCAAAATCTCAGATGCAGCAGAATCGAATCACGAGAGGTTGGTGACGTGGGTGAGGGAGAAAAGGACCAAAGGATCAGAAGTGGGGTCTTGGGTGGAACAGATTGTTGACCCTGCATTAATGGGATCAAACTATGACACACTTCAAATGGAGACTCTGGCAACNGTGGCTTTGGATTGTGTAGAGGAAGAGAAAGACACAAGACCCAGCATGAGCCAAGTAGCTGAGAGGCTCCAAAGTCATGAACATGATTCTTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00540	5837	8236	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04733	IRAK4	EC:2.7.11.1	NF-kappa B signaling pathway	map04064
			Toll-like receptor signaling pathway	map04620
			Toll and Imd signaling pathway	map04624
			NOD-like receptor signaling pathway	map04621
			Neurotrophin signaling pathway	map04722
			Pertussis	map05133
			Tuberculosis	map05152
			Measles	map05162
			Influenza A	map05164
			Toxoplasmosis	map05145
			Leishmaniasis	map05140
			Chagas disease (American trypanosomiasis)	map05142

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0048544 recognition of pollen

molecular_function GO:0004672 protein kinase activity GO:0004674 protein serine/threonine kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000540s00023669.1	PF01453.19	B_lectin	69	168	3.50E-28
Glyur000540s00023669.1	PF00954.15	S_locus_glycop	242	312	5.90E-07
Glyur000540s00023669.1	PF08276.6	PAN_2	331	391	3.20E-05
Glyur000540s00023669.1	PF00069.20	Pkinase	515	790	4.80E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.015
SRR1783600	control	0.015
SRR1783602	moderate drought stress	0.016
SRR1811619	moderate drought stress	0.005

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.045
DRR006520	Root Summer glycyrrhizin high producing strain	0.044
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.045
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.000
SRR2868004	Drought Stress(Tissue:root)	0.021
SRR2967015	Control (Tissue:root)	0.021

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.116
SRR9715740	Leave	0.000
SRR9715741	Leave	0.054
SRR9715739	Root	0.083
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.004
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.047
SRR8749030	Uninduced	0.027
SRR8749031	Uninduced	0.059
SRR8749032	Uninduced	0.234

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.000
SRR8400027	Control-Root	0.007