Gene detail information of Glyur000540s00023671.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G19130.14.00E-89S-locus lectin protein kinase family protein
NRXP_003599324.10Somatic embryogenesis receptor kinase [Medicago truncatula]
COGYP_001958461.17.00E-25hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|P17801|KPRO_MAIZE0Putative receptor protein kinase ZmPK1 (Precursor)
trEMBLtr|G7J0Q7|G7J0Q7_MEDTR0Serine/Threonine kinase, plant-type protein {ECO:0000313|EMBL:AES69575.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005401257614972+


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:1.9.2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04733IRAK4 EC:2.7.11.1 NF-kappa B signaling pathway map04064
Toll-like receptor signaling pathwaymap04620
Toll and Imd signaling pathwaymap04624
NOD-like receptor signaling pathwaymap04621
Neurotrophin signaling pathwaymap04722
Pertussismap05133
Tuberculosismap05152
Measlesmap05162
Influenza Amap05164
Toxoplasmosismap05145
Leishmaniasismap05140
Chagas disease (American trypanosomiasis)map05142


Gene Ontology

biological_process

GO:0006468  protein phosphorylation

GO:0048544  recognition of pollen


molecular_function

GO:0004672  protein kinase activity

GO:0004674  protein serine/threonine kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000540s00023671.1PF01453.19B_lectin681711.20E-21
Glyur000540s00023671.1PF00954.15S_locus_glycop2303137.90E-06
Glyur000540s00023671.1PF08276.6PAN_23373972.40E-05
Glyur000540s00023671.1PF00069.20Pkinase5157881.50E-53


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.992
SRR1783600control1.015
SRR1783602moderate drought stress0.453
SRR1811619moderate drought stress0.420

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.679
DRR006520Root Summer glycyrrhizin high producing strain11.941
DRR006521Root Winter glycyrrhizin high producing strain88.343
DRR006522Root Winter glycyrrhizin high producing strain85.546
DRR006523Root Summer glycyrrhizin low producing strain13.216
DRR006524Root Summer glycyrrhizin low producing strain13.341
DRR006525Leaf Summer glycyrrhizin high producing strain11.220
DRR006526Leaf Summer glycyrrhizin high producing strain11.191

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)3.452
SRR2868004Drought Stress(Tissue:root)4.922
SRR2967015Control (Tissue:root)3.364

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.348
SRR9715740Leave4.352
SRR9715741Leave3.182
SRR9715739Root0.300
SRR9715742Root3.374
SRR9715743Root2.949

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h53.532
SRR8749028MeJA induced 9h108.042
SRR8749029MeJA induced 9h96.062
SRR8749030Uninduced38.983
SRR8749031Uninduced106.220
SRR8749032Uninduced115.089

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.031
SRR8400027Control-Root1.802

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved