Gene detail information of Glyur000542s00017540.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G39840.11.00E-157type one serine/threonine protein phosphatase 4
NRXP_003590947.10Serine/threonine protein phosphatase PP1 [Medicago truncatula]
COGYP_008797523.16.00E-39protein phosphatase [Candidatus Caldiarchaeum subterraneum]
Swissprottr|P48489|PP1_ORYSJ0Serine/threonine-protein phosphatase PP1
trEMBLtr|A0A072VLW3|A0A072VLW3_MEDTR0Serine/threonine-protein phosphatase {ECO:0000256|RuleBase:RU004273}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00542433110144-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06269PPP1C EC:3.1.3.16 mRNA surveillance pathway map03015
Hippo signaling pathwaymap04390
cAMP signaling pathwaymap04024
cGMP - PKG signaling pathwaymap04022
Meiosis - yeastmap04113
Oocyte meiosismap04114
Focal adhesionmap04510
Regulation of actin cytoskeletonmap04810
Platelet activationmap04611
Insulin signaling pathwaymap04910
Oxytocin signaling pathwaymap04921
Adrenergic signaling in cardiomyocytesmap04261
Vascular smooth muscle contractionmap04270
Dopaminergic synapsemap04728
Long-term potentiationmap04720
Inflammatory mediator regulation of TRP channelsmap04750
Proteoglycans in cancermap05205
Amphetamine addictionmap05031
Alcoholismmap05034
Insulin resistancemap04931
Herpes simplex infectionmap05168


Gene Ontology

molecular_function

GO:0016787  hydrolase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000542s00017540.2PF00149.23Metallophos542464.40E-43


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control35.580
SRR1783600control36.125
SRR1783602moderate drought stress33.687
SRR1811619moderate drought stress33.555

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain39.155
DRR006520Root Summer glycyrrhizin high producing strain38.728
DRR006521Root Winter glycyrrhizin high producing strain40.768
DRR006522Root Winter glycyrrhizin high producing strain39.115
DRR006523Root Summer glycyrrhizin low producing strain30.641
DRR006524Root Summer glycyrrhizin low producing strain31.391
DRR006525Leaf Summer glycyrrhizin high producing strain25.153
DRR006526Leaf Summer glycyrrhizin high producing strain24.967

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)76.363
SRR2868004Drought Stress(Tissue:root)85.374
SRR2967015Control (Tissue:root)77.331

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave45.484
SRR9715740Leave44.467
SRR9715741Leave56.048
SRR9715739Root17.814
SRR9715742Root33.947
SRR9715743Root30.601

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h53.467
SRR8749028MeJA induced 9h42.714
SRR8749029MeJA induced 9h43.208
SRR8749030Uninduced49.617
SRR8749031Uninduced60.660
SRR8749032Uninduced45.035

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root55.055
SRR8400027Control-Root52.332

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved