Gene detail information of Glyur000569s00020975.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G56450.12.00E-7720S proteasome beta subunit G1
NRXP_004494673.14.78E-115PREDICTED: proteasome subunit beta type-4-like [Cicer arietinum]
Swissprottr|Q7DLR9|PSB4_ARATH9.00E-97Proteasome subunit beta type-4 (Precursor)
trEMBLtr|I1NC65|I1NC65_SOYBN2.00E-114Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005693523938888-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02736PSMB4 EC:3.4.25.1 Proteasome map03050


Gene Ontology

biological_process

GO:0051603  proteolysis involved in cellular protein catabolic process


cellular_component

GO:0005839  proteasome core complex


molecular_function

GO:0004175  endopeptidase activity

GO:0004298  threonine-type endopeptidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000569s00020975.1PF00227.21Proteasome16781.70E-13
Glyur000569s00020975.1PF00227.21Proteasome851504.90E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control50.832
SRR1783600control51.330
SRR1783602moderate drought stress39.495
SRR1811619moderate drought stress40.151

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain96.191
DRR006520Root Summer glycyrrhizin high producing strain95.271
DRR006521Root Winter glycyrrhizin high producing strain87.815
DRR006522Root Winter glycyrrhizin high producing strain85.705
DRR006523Root Summer glycyrrhizin low producing strain74.802
DRR006524Root Summer glycyrrhizin low producing strain78.852
DRR006525Leaf Summer glycyrrhizin high producing strain40.070
DRR006526Leaf Summer glycyrrhizin high producing strain42.547

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)162.294
SRR2868004Drought Stress(Tissue:root)134.121
SRR2967015Control (Tissue:root)141.598

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave95.996
SRR9715740Leave92.881
SRR9715741Leave105.551
SRR9715739Root81.934
SRR9715742Root73.149
SRR9715743Root78.047

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h119.586
SRR8749028MeJA induced 9h71.373
SRR8749029MeJA induced 9h114.149
SRR8749030Uninduced48.140
SRR8749031Uninduced37.909
SRR8749032Uninduced44.972

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root141.949
SRR8400027Control-Root139.563

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved