Gene detail information of Glyur000575s00024823.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G33580.15.00E-44Protein kinase superfamily protein
NRXP_004498011.10PREDICTED: lysM domain receptor-like kinase 4-like [Cicer arietinum]
COGYP_007779934.13.00E-15Serine/threonine protein kinase [Roseburia intestinalis XB6B4]
Swissprottr|O64825|LYK4_ARATH8.00E-65LysM domain receptor-like kinase 4 (Precursor)
trEMBLtr|G7JWJ0|G7JWJ0_MEDTR0LysM-domain receptor-like kinase {ECO:0000313|EMBL:AES96862.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold005752803231949+


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:1.12.4


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04733IRAK4 EC:2.7.11.1 NF-kappa B signaling pathway map04064
Toll-like receptor signaling pathwaymap04620
Toll and Imd signaling pathwaymap04624
NOD-like receptor signaling pathwaymap04621
Neurotrophin signaling pathwaymap04722
Pertussismap05133
Tuberculosismap05152
Measlesmap05162
Influenza Amap05164
Toxoplasmosismap05145
Leishmaniasismap05140
Chagas disease (American trypanosomiasis)map05142


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000575s00024823.1PF01476.15LysM1962340.00078
Glyur000575s00024823.1PF00069.20Pkinase3835868.00E-35


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control42.509
SRR1783600control42.754
SRR1783602moderate drought stress67.959
SRR1811619moderate drought stress67.597

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.495
DRR006520Root Summer glycyrrhizin high producing strain19.069
DRR006521Root Winter glycyrrhizin high producing strain9.294
DRR006522Root Winter glycyrrhizin high producing strain9.127
DRR006523Root Summer glycyrrhizin low producing strain55.358
DRR006524Root Summer glycyrrhizin low producing strain55.434
DRR006525Leaf Summer glycyrrhizin high producing strain19.357
DRR006526Leaf Summer glycyrrhizin high producing strain19.525

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)46.118
SRR2868004Drought Stress(Tissue:root)52.358
SRR2967015Control (Tissue:root)46.449

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave21.302
SRR9715740Leave19.478
SRR9715741Leave40.078
SRR9715739Root15.150
SRR9715742Root42.790
SRR9715743Root41.775

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h42.608
SRR8749028MeJA induced 9h173.222
SRR8749029MeJA induced 9h75.637
SRR8749030Uninduced56.255
SRR8749031Uninduced120.673
SRR8749032Uninduced72.616

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root34.826
SRR8400027Control-Root34.576

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved