Gene detail information of Glyur000608s00025888.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G10600.1 | 1.00E-80 | associated molecule with the SH3 domain of STAM 2 |
| NR | XP_004514680.1 | 7.38E-150 | PREDICTED: AMSH-like ubiquitin thioesterase 2-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q6NKP9|AMSH2_ARATH | 3.00E-103 | AMSH-like ubiquitin thioesterase 2 |
| trEMBL | tr|G7K1D2|G7K1D2_MEDTR | 1.00E-149 | Uncharacterized protein {ECO:0000313|EMBL:AFK43362.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00608 | 114382 | 119786 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | JAMM |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K11866 | STAMBP, AMSH | EC:3.4.19.12 | Endocytosis | map04144 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000608s00025888.2 | PF01398.16 | JAB | 59 | 167 | 2.10E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.122 |
| SRR1783600 | control | 4.124 |
| SRR1783602 | moderate drought stress | 10.943 |
| SRR1811619 | moderate drought stress | 10.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.108 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.766 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 31.755 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 30.863 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.883 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.370 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.957 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.668 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.371 |
| SRR2967015 | Control (Tissue:root) | 24.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.393 |
| SRR9715740 | Leave | 13.466 |
| SRR9715741 | Leave | 16.870 |
| SRR9715739 | Root | 1.097 |
| SRR9715742 | Root | 2.688 |
| SRR9715743 | Root | 2.887 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.448 |
| SRR8749028 | MeJA induced 9h | 21.042 |
| SRR8749029 | MeJA induced 9h | 18.764 |
| SRR8749030 | Uninduced | 23.038 |
| SRR8749031 | Uninduced | 38.527 |
| SRR8749032 | Uninduced | 39.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.577 |
| SRR8400027 | Control-Root | 7.789 |