Gene detail information of Glyur000640s00024115.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G48790.13.00E-167associated molecule with the SH3 domain of STAM 1
NRXP_003620442.10STAM-binding protein [Medicago truncatula]
Swissprottr|Q8VYB5|AMSH1_ARATH0AMSH-like ubiquitin thioesterase 1
trEMBLtr|G7KN01|G7KN01_MEDTR0AMSH-like ubiquitin thioesterase {ECO:0000313|EMBL:AES76660.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006404280848308+


Gene family

Gene familysubfamily
Ubiquitin FamilyJAMM


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11866STAMBP, AMSH EC:3.4.19.12 Endocytosis map04144


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000640s00024115.1PF08969.6USP8_dimer731611.10E-11
Glyur000640s00024115.1PF01398.16JAB3975021.20E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control21.319
SRR1783600control21.504
SRR1783602moderate drought stress17.955
SRR1811619moderate drought stress17.811

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.171
DRR006520Root Summer glycyrrhizin high producing strain18.194
DRR006521Root Winter glycyrrhizin high producing strain26.173
DRR006522Root Winter glycyrrhizin high producing strain25.384
DRR006523Root Summer glycyrrhizin low producing strain26.439
DRR006524Root Summer glycyrrhizin low producing strain26.200
DRR006525Leaf Summer glycyrrhizin high producing strain16.689
DRR006526Leaf Summer glycyrrhizin high producing strain16.397

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)36.304
SRR2868004Drought Stress(Tissue:root)51.572
SRR2967015Control (Tissue:root)49.986

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.056
SRR9715740Leave16.521
SRR9715741Leave26.236
SRR9715739Root5.963
SRR9715742Root16.737
SRR9715743Root16.919

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h41.463
SRR8749028MeJA induced 9h60.146
SRR8749029MeJA induced 9h54.990
SRR8749030Uninduced57.178
SRR8749031Uninduced125.013
SRR8749032Uninduced91.828

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root34.812
SRR8400027Control-Root34.516

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved