Gene detail information of Glyur000665s00020415.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G21720.12.00E-83proteasome beta subunit C1
NRNP_001237278.13.91E-109uncharacterized protein LOC100306084 [Glycine max]
COGYP_006545459.17.00E-09proteasome beta subunit [Methanoculleus bourgensis MS2]
Swissprottr|Q9XI05|PSB3A_ARATH2.00E-105Proteasome subunit beta type-3-A
trEMBLtr|C6SXW4|C6SXW4_SOYBN1.00E-109Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold006653472838118-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02735PSMB3 EC:3.4.25.1 Proteasome map03050


Gene Ontology

biological_process

GO:0051603  proteolysis involved in cellular protein catabolic process


cellular_component

GO:0005839  proteasome core complex


molecular_function

GO:0004175  endopeptidase activity

GO:0004298  threonine-type endopeptidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000665s00020415.1PF00227.21Proteasome7636.40E-11
Glyur000665s00020415.1PF00227.21Proteasome651537.30E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control65.403
SRR1783600control65.297
SRR1783602moderate drought stress43.253
SRR1811619moderate drought stress42.568

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain118.347
DRR006520Root Summer glycyrrhizin high producing strain116.854
DRR006521Root Winter glycyrrhizin high producing strain104.084
DRR006522Root Winter glycyrrhizin high producing strain102.559
DRR006523Root Summer glycyrrhizin low producing strain80.746
DRR006524Root Summer glycyrrhizin low producing strain81.160
DRR006525Leaf Summer glycyrrhizin high producing strain51.414
DRR006526Leaf Summer glycyrrhizin high producing strain50.935

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)187.289
SRR2868004Drought Stress(Tissue:root)129.600
SRR2967015Control (Tissue:root)129.819

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave70.566
SRR9715740Leave67.708
SRR9715741Leave74.590
SRR9715739Root47.704
SRR9715742Root54.812
SRR9715743Root51.976

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h94.188
SRR8749028MeJA induced 9h54.308
SRR8749029MeJA induced 9h69.117
SRR8749030Uninduced31.175
SRR8749031Uninduced25.257
SRR8749032Uninduced30.507

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root144.604
SRR8400027Control-Root132.942

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved