Gene detail information of Glyur000785s00024152.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G15730.10phospholipase D alpha 1
NRXP_003603407.10Phospholipase D alpha [Medicago truncatula]
COGYP_003981721.13.00E-33phospholipase D [Achromobacter xylosoxidans A8]
Swissprottr|P86387|PLDA1_CARPA0Phospholipase D alpha 1 {ECO:0000250|UniProtKB:Q41142}
trEMBLtr|G7JB30|G7JB30_MEDTR0Phospholipase D {ECO:0000256|PIRNR:PIRNR036470}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold007854121545038-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01115PLD1_2 EC:3.1.4.4 Glycerophospholipid metabolism map00564
Ether lipid metabolismmap00565
Ras signaling pathwaymap04014
Phospholipase D signaling pathwaymap04072
Sphingolipid signaling pathwaymap04071
cAMP signaling pathwaymap04024
Endocytosismap04144
Fc gamma R-mediated phagocytosismap04666
GnRH signaling pathwaymap04912
Glutamatergic synapsemap04724
Choline metabolism in cancermap05231


Gene Ontology

biological_process

GO:0046470  phosphatidylcholine metabolic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0003824  catalytic activity

GO:0004630  phospholipase D activity

GO:0005509  calcium ion binding

GO:0005515  protein binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000785s00024152.1PF00168.25C29951.20E-12
Glyur000785s00024152.1PF00614.17PLDc3113483.70E-09
Glyur000785s00024152.1PF00614.17PLDc6406667.90E-08
Glyur000785s00024152.1PF12357.3PLD_C7167873.90E-22


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.345
SRR1783600control0.377
SRR1783602moderate drought stress0.555
SRR1811619moderate drought stress0.537

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.554
DRR006520Root Summer glycyrrhizin high producing strain1.562
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain2.196
DRR006524Root Summer glycyrrhizin low producing strain2.053
DRR006525Leaf Summer glycyrrhizin high producing strain0.915
DRR006526Leaf Summer glycyrrhizin high producing strain1.025

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.189
SRR2868004Drought Stress(Tissue:root)1.994
SRR2967015Control (Tissue:root)2.006

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.606
SRR9715740Leave0.273
SRR9715741Leave0.244
SRR9715739Root0.020
SRR9715742Root1.112
SRR9715743Root0.870

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.085
SRR8749028MeJA induced 9h0.054
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.013
SRR8749031Uninduced0.061
SRR8749032Uninduced0.159

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.786
SRR8400027Control-Root0.607

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved