Gene detail information of Glyur001021s00028014.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47900.1 | 2.00E-64 | Protein of unknown function (DUF1624) |
| NR | XP_004500724.1 | 0 | PREDICTED: uncharacterized protein LOC101494283 [Cicer arietinum] |
| COG | YP_007223387.1 | 3.00E-24 | hypothetical protein Echvi_1106 [Echinicola vietnamensis DSM 17526] |
| trEMBL | tr|V7AYL3|V7AYL3_PHAVU | 5.00E-176 | Uncharacterized protein {ECO:0000313|EMBL:ESW09336.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01021 | 39893 | 44698 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10532 | HGSNAT | EC:2.3.1.78 | Glycosaminoglycan degradation | map00531 |
| Lysosome | map04142 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.259 |
| SRR1783600 | control | 6.305 |
| SRR1783602 | moderate drought stress | 7.104 |
| SRR1811619 | moderate drought stress | 7.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.349 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.400 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.101 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.647 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.160 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.078 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.704 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.725 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.146 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.893 |
| SRR2967015 | Control (Tissue:root) | 16.799 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.034 |
| SRR9715740 | Leave | 10.776 |
| SRR9715741 | Leave | 11.144 |
| SRR9715739 | Root | 3.990 |
| SRR9715742 | Root | 7.138 |
| SRR9715743 | Root | 7.357 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.151 |
| SRR8749028 | MeJA induced 9h | 10.017 |
| SRR8749029 | MeJA induced 9h | 7.950 |
| SRR8749030 | Uninduced | 8.336 |
| SRR8749031 | Uninduced | 4.338 |
| SRR8749032 | Uninduced | 7.741 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.550 |
| SRR8400027 | Control-Root | 16.781 |