Gene detail

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Gene detail information of Glyur001070s00024980.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G56790.1	8.00E-40	Protein kinase superfamily protein
NR	KHN24361.1	2.18E-176	Proline-rich receptor-like protein kinase PERK8 [Glycine soja]
COG	YP_003300616.1	6.00E-07	serine/threonine protein kinase with PASTA sensor(s) [Thermomonospora curvata DSM 43183]
Swissprot	tr\|P0DH62\|Y4407_SELML	2.00E-45	Inactive protein kinase SELMODRAFT_444075
trEMBL	tr\|K7LY27\|K7LY27_SOYBN	2.00E-176	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G09341.1}

Sequence

Transcript Sequence

>Glyur001070s00024980.1
ATGGAGAACAAGTCTTATGTCATAATGGCGTGTGACACAACAAAAGATCGCAATGAGCATGAGATCAAGCTTGTGGTTGATCACCTTCGAAGCAGCAGGGGTGGTGACATTCTCTCTGCCGGTGACACCTTGCTTCTGCTTGGTGTCTTGCATAAGACATTAGCATGCCCGGAGTCTTTTGCTGGCACCAACATTCGTGCAATGGAGGAAGTAGTTAACAAGAAAGTTGATGCATATAGAAGTGTGCTTCTCCAGAGTTATGAAGAATGTGAAAATAAAGGGGTTAGCATCGAAGTTAAAGTGACTGCAGGTTTTCCAATTAGACAGGTTATTGTACAAGAGATTACAAACTATAACGCATCTTGGGTTATTCTTGATAGGCACCTTAGGCGTGACCTGAGATTCTACAAAAACAAGATATCATGTAAGGTTGCGTTGGTTAAAGATGACCTCTCAGTAGAGATTTGGAGATCTCATCATGTAAATCAAACAGATGTCACGGGACAAAAGCTTACGTATTCTTTGTCAAAGTGTGTTTCACTATCAGATAGTCATAGTAATGAAGACGTGGAGCAGCAATCTGTTACCATTTGTGAAAGTTATCCCCTTTCCATAACTTCTTCTGACTGCTCTAGCATGCTTAACAGCAGTACGACACATTCAAATGCTAACAGGTCAGAGGAGCCTAGTTCTTCAACACATTTTGGGTCTTCTTCAGGCATAAGCAGGAAAGGAGAACATAAGCATCACATTACTTCTAACATTTTACAAAAGCAGAACAAATACGGCTTTCTATCAAATTCTTCAGATGCTCCAATTCTATGTGCTGGTTGTGGGACAAGGACTGAATTATATGTCAAGGAGTTAACGAGGTTCAGCTATTCTGATGTACAACTTGCCACAAATGATTTTTCAAAGGACAACTTGTTAGGTGAAGGTGGATATGGTCACGTATACAAGGGCACGCTTAAAGATGGACAACAAATAGCTGCAAAGGTAAGGAAGGAAGAAAGCACACAGGGGTTTTCTGAATTCCATTCTGAGATAAAAATGCAGAAGTTCTCCCATGGCACCAAAGAAATGCTATTGCCATTGGAACTGCAAAGGGATTGCGTTTTCTACACGAGGAATGTCGTGGAGCTAGGTGACTTTGGCCTTGCCAAATGGAAGACTACTGGTGATGAGACTCAACAAGCAAGGATNATGGGCACATTTGGGTACCTTGCTCCAGAGTACGCAGAAGATGGCATAGTCTCTGAGGCGCTAGATGTGTATGCCTATGGCATTGTGTTGTTACAATTGATAACAGGATGCAAGGTCAACTCTAGTCCAGAGCAACATCTCTCTCTTCGACAATGGGCGGAGCCAAAGATTGAGAAGTTAGCTTTTGATGAACTCGTGGACTCTCGTCTTGGGGAGTCATATAACTCAAATGAGCTATACCTCATGGCGAAAGTAGCATACTACTGTGTGCAAAGAAATCACGAGAAGCGCCCAACAATGGGAGAGGCTAATATAGACTTCAGTGTCTATAGAAGTGAAAAAGAAAACAAGTTAAACCATGCCTTATCTTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold01070	66321	71974	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.6.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04730	IRAK1	EC:2.7.11.1	NF-kappa B signaling pathway	map04064
			Toll-like receptor signaling pathway	map04620
			Toll and Imd signaling pathway	map04624
			Neurotrophin signaling pathway	map04722
			Pertussis	map05133
			Tuberculosis	map05152
			Measles	map05162
			Epstein-Barr virus infection	map05169
			Toxoplasmosis	map05145
			Leishmaniasis	map05140
			Chagas disease (American trypanosomiasis)	map05142

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001070s00024980.1	PF00069.20	Pkinase	376	504	2.30E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.094
SRR2868004	Drought Stress(Tissue:root)	0.031
SRR2967015	Control (Tissue:root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.000
SRR9715741	Leave	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.245
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.028
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.013
SRR8400027	Control-Root	0.113