Gene detail information of Glyur001239s00031796.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G60820.35.00E-90N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
NRXP_003532008.14.35E-134PREDICTED: proteasome subunit beta type-1-like [Glycine max]
COGNP_560846.18.00E-20proteasome subunit beta [Pyrobaculum aerophilum str. IM2]
Swissprottr|O82531|PSB1_PETHY4.00E-129Proteasome subunit beta type-1
trEMBLtr|I1KXF0|I1KXF0_SOYBN2.00E-134Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold012393234441210+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02732PSMB1 EC:3.4.25.1 Proteasome map03050


Gene Ontology

biological_process

GO:0051603  proteolysis involved in cellular protein catabolic process


cellular_component

GO:0005839  proteasome core complex


molecular_function

GO:0004175  endopeptidase activity

GO:0004298  threonine-type endopeptidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001239s00031796.1PF00227.21Proteasome131613.10E-31


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control48.757
SRR1783600control49.259
SRR1783602moderate drought stress45.167
SRR1811619moderate drought stress45.855

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain43.187
DRR006520Root Summer glycyrrhizin high producing strain42.710
DRR006521Root Winter glycyrrhizin high producing strain63.467
DRR006522Root Winter glycyrrhizin high producing strain60.560
DRR006523Root Summer glycyrrhizin low producing strain32.767
DRR006524Root Summer glycyrrhizin low producing strain33.602
DRR006525Leaf Summer glycyrrhizin high producing strain26.836
DRR006526Leaf Summer glycyrrhizin high producing strain27.251

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)63.168
SRR2868004Drought Stress(Tissue:root)62.825
SRR2967015Control (Tissue:root)55.021

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave26.614
SRR9715740Leave28.767
SRR9715741Leave34.573
SRR9715739Root32.744
SRR9715742Root29.208
SRR9715743Root27.585

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h113.782
SRR8749028MeJA induced 9h63.051
SRR8749029MeJA induced 9h77.060
SRR8749030Uninduced37.212
SRR8749031Uninduced33.087
SRR8749032Uninduced39.536

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root47.869
SRR8400027Control-Root49.726

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved