Gene detail information of Glyur001416s00028542.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G16470.28.00E-118proteasome subunit PAB1
NRXP_006584581.11.32E-157PREDICTED: uncharacterized protein LOC100799108 isoform X1 [Glycine max]
COGNP_579300.14.00E-56proteasome subunit alpha [Pyrococcus furiosus DSM 3638]
Swissprottr|O23708|PSA2A_ARATH7.00E-149Proteasome subunit alpha type-2-A
trEMBLtr|I3RZ63|I3RZ63_LOTJA6.00E-157Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold014162908237783-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02726PSMA2 EC:3.4.25.1 Proteasome map03050


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0051603  proteolysis involved in cellular protein catabolic process


cellular_component

GO:0005839  proteasome core complex

GO:0019773  proteasome core complex, alpha-subunit complex


molecular_function

GO:0004175  endopeptidase activity

GO:0004298  threonine-type endopeptidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001416s00028542.1PF10584.4Proteasome_A_N48707.20E-10
Glyur001416s00028542.1PF00227.21Proteasome732453.10E-53


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control40.814
SRR1783600control40.997
SRR1783602moderate drought stress42.543
SRR1811619moderate drought stress41.921

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain111.496
DRR006520Root Summer glycyrrhizin high producing strain109.365
DRR006521Root Winter glycyrrhizin high producing strain103.377
DRR006522Root Winter glycyrrhizin high producing strain99.378
DRR006523Root Summer glycyrrhizin low producing strain84.296
DRR006524Root Summer glycyrrhizin low producing strain84.876
DRR006525Leaf Summer glycyrrhizin high producing strain51.302
DRR006526Leaf Summer glycyrrhizin high producing strain49.976

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)189.329
SRR2868004Drought Stress(Tissue:root)170.812
SRR2967015Control (Tissue:root)128.983

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave105.660
SRR9715740Leave122.506
SRR9715741Leave120.421
SRR9715739Root91.051
SRR9715742Root88.712
SRR9715743Root88.439

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h207.313
SRR8749028MeJA induced 9h167.624
SRR8749029MeJA induced 9h165.586
SRR8749030Uninduced105.286
SRR8749031Uninduced69.557
SRR8749032Uninduced78.650

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root166.366
SRR8400027Control-Root166.403

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved