Gene detail information of Glyur001422s00031020.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G35790.10phospholipase D delta
NRXP_004500903.10PREDICTED: phospholipase D delta-like isoform X1 [Cicer arietinum]
COGYP_003981721.12.00E-27phospholipase D [Achromobacter xylosoxidans A8]
Swissprottr|Q9C5Y0|PLDD1_ARATH0Phospholipase D delta
trEMBLtr|I1JSY8|I1JSY8_SOYBN0Phospholipase D {ECO:0000256|PIRNR:PIRNR036470}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold014225380360224+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01115PLD1_2 EC:3.1.4.4 Glycerophospholipid metabolism map00564
Ether lipid metabolismmap00565
Ras signaling pathwaymap04014
Phospholipase D signaling pathwaymap04072
Sphingolipid signaling pathwaymap04071
cAMP signaling pathwaymap04024
Endocytosismap04144
Fc gamma R-mediated phagocytosismap04666
GnRH signaling pathwaymap04912
Glutamatergic synapsemap04724
Choline metabolism in cancermap05231


Gene Ontology

biological_process

GO:0046470  phosphatidylcholine metabolic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0003824  catalytic activity

GO:0004630  phospholipase D activity

GO:0005509  calcium ion binding

GO:0005515  protein binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001422s00031020.1PF00168.25C2151281.20E-23
Glyur001422s00031020.1PF00614.17PLDc3694044.90E-08
Glyur001422s00031020.1PF00614.17PLDc7107361.50E-07
Glyur001422s00031020.1PF12357.3PLD_C7838551.90E-31


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.555
SRR1783600control0.545
SRR1783602moderate drought stress0.743
SRR1811619moderate drought stress0.748

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.180
DRR006520Root Summer glycyrrhizin high producing strain1.293
DRR006521Root Winter glycyrrhizin high producing strain0.191
DRR006522Root Winter glycyrrhizin high producing strain0.186
DRR006523Root Summer glycyrrhizin low producing strain3.065
DRR006524Root Summer glycyrrhizin low producing strain2.860
DRR006525Leaf Summer glycyrrhizin high producing strain2.691
DRR006526Leaf Summer glycyrrhizin high producing strain2.770

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.317
SRR2868004Drought Stress(Tissue:root)3.646
SRR2967015Control (Tissue:root)3.865

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.847
SRR9715740Leave1.910
SRR9715741Leave2.191
SRR9715739Root0.458
SRR9715742Root1.058
SRR9715743Root0.711

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.298
SRR8749028MeJA induced 9h11.835
SRR8749029MeJA induced 9h16.003
SRR8749030Uninduced18.654
SRR8749031Uninduced9.993
SRR8749032Uninduced6.605

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.611
SRR8400027Control-Root3.176

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved