Gene detail information of Glyur001495s00036173.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G12570.10ubiquitin protein ligase 5
NRXP_003549564.10PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max]
COGYP_004237113.13.00E-10hypothetical protein Acav_4667 [Acidovorax avenae subsp. avenae ATCC 19860]
Swissprottr|Q9SU29|UPL5_ARATH0E3 ubiquitin-protein ligase UPL5
trEMBLtr|K7MJB8|K7MJB8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G01210.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold014951997325227-


Gene family

Gene familysubfamily
Ubiquitin FamilyHECT


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10591NEDD4, RSP5 EC:2.3.2.26 Ubiquitin mediated proteolysis map04120
MAPK signaling pathway - yeastmap04011
Endocytosismap04144
Tight junctionmap04530
Epstein-Barr virus infectionmap05169


Gene Ontology

molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001495s00036173.1PF00240.18ubiquitin651312.40E-14
Glyur001495s00036173.1PF00632.20HECT5398425.80E-71


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.881
SRR1783600control9.034
SRR1783602moderate drought stress10.022
SRR1811619moderate drought stress10.094

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.788
DRR006520Root Summer glycyrrhizin high producing strain11.508
DRR006521Root Winter glycyrrhizin high producing strain16.113
DRR006522Root Winter glycyrrhizin high producing strain15.714
DRR006523Root Summer glycyrrhizin low producing strain22.819
DRR006524Root Summer glycyrrhizin low producing strain22.898
DRR006525Leaf Summer glycyrrhizin high producing strain6.167
DRR006526Leaf Summer glycyrrhizin high producing strain6.137

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.401
SRR2868004Drought Stress(Tissue:root)25.672
SRR2967015Control (Tissue:root)27.428

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.061
SRR9715740Leave9.821
SRR9715741Leave14.004
SRR9715739Root11.281
SRR9715742Root19.598
SRR9715743Root17.685

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.870
SRR8749028MeJA induced 9h13.123
SRR8749029MeJA induced 9h10.468
SRR8749030Uninduced7.981
SRR8749031Uninduced8.802
SRR8749032Uninduced6.270

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.995
SRR8400027Control-Root15.225

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved