Gene detail information of Glyur001537s00028914.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G16785.13.00E-145phospholipase D P1
NRXP_003546370.10PREDICTED: phospholipase D p1-like isoform X1 [Glycine max]
COGNP_252177.17.00E-29phospholipase D [Pseudomonas aeruginosa PAO1]
Swissprottr|Q9LRZ5|PLDP1_ARATH4.00E-172Phospholipase D p1
trEMBLtr|I1MGP5|I1MGP5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G16270.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold015376447866563-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01115PLD1_2 EC:3.1.4.4 Glycerophospholipid metabolism map00564
Ether lipid metabolismmap00565
Ras signaling pathwaymap04014
Phospholipase D signaling pathwaymap04072
Sphingolipid signaling pathwaymap04071
cAMP signaling pathwaymap04024
Endocytosismap04144
Fc gamma R-mediated phagocytosismap04666
GnRH signaling pathwaymap04912
Glutamatergic synapsemap04724
Choline metabolism in cancermap05231


Gene Ontology

biological_process

GO:0006432  phenylalanyl-tRNA aminoacylation

GO:0008033  tRNA processing


molecular_function

GO:0000049  tRNA binding

GO:0000287  magnesium ion binding

GO:0003824  catalytic activity

GO:0004826  phenylalanine-tRNA ligase activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001537s00028914.1PF13091.1PLDc_21061701.70E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.199
SRR1783600control9.444
SRR1783602moderate drought stress13.519
SRR1811619moderate drought stress13.436

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.638
DRR006520Root Summer glycyrrhizin high producing strain15.735
DRR006521Root Winter glycyrrhizin high producing strain71.266
DRR006522Root Winter glycyrrhizin high producing strain69.541
DRR006523Root Summer glycyrrhizin low producing strain16.506
DRR006524Root Summer glycyrrhizin low producing strain18.272
DRR006525Leaf Summer glycyrrhizin high producing strain12.026
DRR006526Leaf Summer glycyrrhizin high producing strain11.587

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.232
SRR2868004Drought Stress(Tissue:root)21.789
SRR2967015Control (Tissue:root)18.446

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.630
SRR9715740Leave18.037
SRR9715741Leave21.502
SRR9715739Root1.746
SRR9715742Root9.848
SRR9715743Root7.564

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h34.706
SRR8749028MeJA induced 9h55.150
SRR8749029MeJA induced 9h82.429
SRR8749030Uninduced130.039
SRR8749031Uninduced167.925
SRR8749032Uninduced157.068

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.559
SRR8400027Control-Root17.229

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved