Gene detail information of Glyur001585s00040806.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G12180.1 | 0 | calcium-dependent protein kinase 17 |
| NR | XP_003622837.1 | 0 | Calcium dependent protein kinase [Medicago truncatula] |
| COG | YP_642814.1 | 3.00E-27 | serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941] |
| Swissprot | tr|Q9FMP5|CDPKH_ARATH | 0 | Calcium-dependent protein kinase 17 |
| trEMBL | tr|A0A072TK46|A0A072TK46_MEDTR | 0 | Calmodulin-domain kinase CDPK protein {ECO:0000313|EMBL:KEH17263.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01585 | 27089 | 31953 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:4.2.1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13412 | CPK | EC:2.7.11.1 | Plant-pathogen interaction | map04626 |
| Toxoplasmosis | map05145 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001585s00040806.1 | PF00069.20 | Pkinase | 81 | 339 | 1.00E-69 |
| Glyur001585s00040806.1 | PF13499.1 | EF-hand_7 | 387 | 446 | 1.10E-13 |
| Glyur001585s00040806.1 | PF13499.1 | EF-hand_7 | 459 | 518 | 1.20E-11 |
| Glyur001585s00040806.1 | PF13499.1 | EF-hand_7 | 548 | 607 | 2.80E-14 |
| Glyur001585s00040806.1 | PF13499.1 | EF-hand_7 | 620 | 679 | 1.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.045 |
| SRR1783600 | control | 0.070 |
| SRR1783602 | moderate drought stress | 0.006 |
| SRR1811619 | moderate drought stress | 0.035 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.020 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.024 |
| SRR9715742 | Root | 0.035 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.012 |
| SRR8400027 | Control-Root | 0.008 |