Gene detail information of Glyur001705s00034726.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G22110.13.00E-10320S proteasome alpha subunit C1
NRXP_004502013.13.01E-160PREDICTED: proteasome subunit alpha type-4-like [Cicer arietinum]
COGNP_579300.11.00E-52proteasome subunit alpha [Pyrococcus furiosus DSM 3638]
Swissprottr|O81148|PSA4A_ARATH2.00E-150Proteasome subunit alpha type-4-A
trEMBLtr|V7AR26|V7AR26_PHAVU8.00E-159Proteasome subunit alpha type {ECO:0000256|RuleBase:RU000551}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0170523648416+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02728PSMA4 EC:3.4.25.1 Proteasome map03050


Gene Ontology

biological_process

GO:0051603  proteolysis involved in cellular protein catabolic process


cellular_component

GO:0005839  proteasome core complex


molecular_function

GO:0004298  threonine-type endopeptidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001705s00034726.1PF00227.21Proteasome602442.80E-61


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control97.729
SRR1783600control98.039
SRR1783602moderate drought stress81.270
SRR1811619moderate drought stress80.408

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain106.701
DRR006520Root Summer glycyrrhizin high producing strain103.455
DRR006521Root Winter glycyrrhizin high producing strain126.691
DRR006522Root Winter glycyrrhizin high producing strain126.871
DRR006523Root Summer glycyrrhizin low producing strain80.494
DRR006524Root Summer glycyrrhizin low producing strain82.215
DRR006525Leaf Summer glycyrrhizin high producing strain76.967
DRR006526Leaf Summer glycyrrhizin high producing strain78.853

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)82.259
SRR2868004Drought Stress(Tissue:root)66.306
SRR2967015Control (Tissue:root)60.880

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave48.243
SRR9715740Leave46.231
SRR9715741Leave60.667
SRR9715739Root43.491
SRR9715742Root78.425
SRR9715743Root64.316

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h162.915
SRR8749028MeJA induced 9h73.055
SRR8749029MeJA induced 9h119.968
SRR8749030Uninduced65.382
SRR8749031Uninduced50.568
SRR8749032Uninduced60.389

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root72.720
SRR8400027Control-Root72.572

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved