Gene detail information of Glyur001708s00041152.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G08900.1 | 2.00E-64 | arginase |
| NR | BAI22841.1 | 3.68E-80 | arginase [Gentiana triflora] |
| COG | YP_861050.1 | 8.00E-32 | arginase [Gramella forsetii KT0803] |
| Swissprot | tr|P46637|ARGI1_ARATH | 8.00E-79 | Arginase 1, mitochondrial (Precursor) |
| trEMBL | tr|C7G0W6|C7G0W6_GENTR | 1.00E-80 | Arginase {ECO:0000313|EMBL:BAI22841.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01708 | 39864 | 41381 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01476 | E3.5.3.1, rocF, arg | EC:3.5.3.1 | Biosynthesis of amino acids | map01230 |
| Arginine biosynthesis | map00220 | |||
| Arginine and proline metabolism | map00330 | |||
| Amoebiasis | map05146 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001708s00041152.1 | PF00491.16 | Arginase | 6 | 134 | 2.90E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.382 |
| SRR1783600 | control | 8.486 |
| SRR1783602 | moderate drought stress | 0.054 |
| SRR1811619 | moderate drought stress | 0.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.005 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.898 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.261 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.017 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 15.213 |
| SRR9715740 | Leave | 0.292 |
| SRR9715741 | Leave | 2.563 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.129 |
| SRR9715743 | Root | 0.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.000 |