Gene detail information of Glyur001728s00037473.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G72990.23.00E-32beta-galactosidase 17
NRABD28499.16.93E-36Galactose-binding like [Medicago truncatula]
COGYP_004219583.15.00E-14glycoside hydrolase family protein [Granulicella tundricola MP5ACTX9]
Swissprottr|Q93Z24|BGA17_ARATH3.00E-35Beta-galactosidase 17 (Precursor)
trEMBLtr|Q2HVE8|Q2HVE8_MEDTR3.00E-36Galactose-binding like {ECO:0000313|EMBL:ABD28499.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold017282510527603+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH35


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12309GLB1, ELNR1 EC:3.2.1.23 Galactose metabolism map00052
Sphingolipid metabolismmap00600
Glycosaminoglycan degradationmap00531
Glycosphingolipid biosynthesis - ganglio seriesmap00604
Other glycan degradationmap00511
Lysosomemap04142


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001728s00037473.1PF01301.14Glyco_hydro_35621453.30E-21


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.334
SRR1783600control11.357
SRR1783602moderate drought stress7.731
SRR1811619moderate drought stress6.844

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.741
DRR006520Root Summer glycyrrhizin high producing strain11.588
DRR006521Root Winter glycyrrhizin high producing strain7.804
DRR006522Root Winter glycyrrhizin high producing strain8.396
DRR006523Root Summer glycyrrhizin low producing strain13.406
DRR006524Root Summer glycyrrhizin low producing strain14.026
DRR006525Leaf Summer glycyrrhizin high producing strain21.982
DRR006526Leaf Summer glycyrrhizin high producing strain21.696

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.271
SRR2868004Drought Stress(Tissue:root)13.514
SRR2967015Control (Tissue:root)9.966

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.201
SRR9715740Leave0.193
SRR9715741Leave0.287
SRR9715739Root0.350
SRR9715742Root0.340
SRR9715743Root0.067

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h35.112
SRR8749028MeJA induced 9h34.956
SRR8749029MeJA induced 9h27.885
SRR8749030Uninduced32.792
SRR8749031Uninduced23.438
SRR8749032Uninduced46.251

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.977
SRR8400027Control-Root4.647

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved