Gene detail information of Glyur001806s00029952.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G42010.10phospholipase D beta 1
NRKEH18997.10phospholipase D alpha 1 [Medicago truncatula]
COGYP_003981721.12.00E-32phospholipase D [Achromobacter xylosoxidans A8]
Swissprottr|P93733|PLDB1_ARATH0Phospholipase D beta 1
trEMBLtr|A0A072TNL6|A0A072TNL6_MEDTR0Phospholipase D alpha 1 {ECO:0000313|EMBL:KEH18997.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold01806296610298-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01115PLD1_2 EC:3.1.4.4 Glycerophospholipid metabolism map00564
Ether lipid metabolismmap00565
Ras signaling pathwaymap04014
Phospholipase D signaling pathwaymap04072
Sphingolipid signaling pathwaymap04071
cAMP signaling pathwaymap04024
Endocytosismap04144
Fc gamma R-mediated phagocytosismap04666
GnRH signaling pathwaymap04912
Glutamatergic synapsemap04724
Choline metabolism in cancermap05231


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001806s00029952.1PF00168.25C22253291.20E-21
Glyur001806s00029952.1PF00614.17PLDc5485831.30E-11
Glyur001806s00029952.1PF00614.17PLDc8708964.00E-07
Glyur001806s00029952.1PF12357.3PLD_C94310132.00E-30


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.485
SRR1783600control8.311
SRR1783602moderate drought stress9.619
SRR1811619moderate drought stress9.444

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain25.934
DRR006520Root Summer glycyrrhizin high producing strain25.433
DRR006521Root Winter glycyrrhizin high producing strain11.895
DRR006522Root Winter glycyrrhizin high producing strain11.876
DRR006523Root Summer glycyrrhizin low producing strain40.561
DRR006524Root Summer glycyrrhizin low producing strain40.746
DRR006525Leaf Summer glycyrrhizin high producing strain2.776
DRR006526Leaf Summer glycyrrhizin high producing strain2.628

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.496
SRR2868004Drought Stress(Tissue:root)19.992
SRR2967015Control (Tissue:root)12.531

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.685
SRR9715740Leave9.363
SRR9715741Leave20.543
SRR9715739Root7.034
SRR9715742Root35.072
SRR9715743Root31.947

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.441
SRR8749028MeJA induced 9h51.101
SRR8749029MeJA induced 9h52.020
SRR8749030Uninduced88.062
SRR8749031Uninduced95.589
SRR8749032Uninduced55.882

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.536
SRR8400027Control-Root22.391

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved