Gene detail information of Glyur001818s00030076.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G26040.2 | 4.00E-157 | histone deacetylase 2 |
NR | AFK34923.1 | 0 | unknown [Lotus japonicus] |
COG | YP_002432020.1 | 2.00E-99 | histone deacetylase superfamily protein [Desulfatibacillum alkenivorans AK-01] |
Swissprot | tr|Q944K3|HDA2_ARATH | 0 | Histone deacetylase 2 |
trEMBL | tr|I3S3T1|I3S3T1_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK34923.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold01818 | 1602 | 5825 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K11418 | HDAC11 | EC:3.5.1.98 | Viral carcinogenesis | map05203 |
Alcoholism | map05034 |
Gene OntologyNot hits found. |
Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur001818s00030076.1 | PF00850.14 | Hist_deacetyl | 94 | 380 | 9.60E-54 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 16.936 |
SRR1783600 | control | 17.218 |
SRR1783602 | moderate drought stress | 24.595 |
SRR1811619 | moderate drought stress | 24.087 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 22.700 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 22.632 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 24.460 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 23.478 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 17.040 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 16.758 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.663 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.346 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 11.560 |
SRR2868004 | Drought Stress(Tissue:root) | 14.582 |
SRR2967015 | Control (Tissue:root) | 16.045 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 7.734 |
SRR9715740 | Leave | 13.300 |
SRR9715741 | Leave | 9.075 |
SRR9715739 | Root | 6.407 |
SRR9715742 | Root | 10.400 |
SRR9715743 | Root | 11.455 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 12.588 |
SRR8749028 | MeJA induced 9h | 11.004 |
SRR8749029 | MeJA induced 9h | 10.860 |
SRR8749030 | Uninduced | 5.299 |
SRR8749031 | Uninduced | 5.069 |
SRR8749032 | Uninduced | 6.976 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 23.757 |
SRR8400027 | Control-Root | 22.786 |