Gene detail information of Glyur001818s00030076.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G26040.24.00E-157histone deacetylase 2
NRAFK34923.10unknown [Lotus japonicus]
COGYP_002432020.12.00E-99histone deacetylase superfamily protein [Desulfatibacillum alkenivorans AK-01]
Swissprottr|Q944K3|HDA2_ARATH0Histone deacetylase 2
trEMBLtr|I3S3T1|I3S3T1_LOTJA0Uncharacterized protein {ECO:0000313|EMBL:AFK34923.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0181816025825-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11418HDAC11 EC:3.5.1.98 Viral carcinogenesis map05203
Alcoholismmap05034


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001818s00030076.1PF00850.14Hist_deacetyl943809.60E-54


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.936
SRR1783600control17.218
SRR1783602moderate drought stress24.595
SRR1811619moderate drought stress24.087

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.700
DRR006520Root Summer glycyrrhizin high producing strain22.632
DRR006521Root Winter glycyrrhizin high producing strain24.460
DRR006522Root Winter glycyrrhizin high producing strain23.478
DRR006523Root Summer glycyrrhizin low producing strain17.040
DRR006524Root Summer glycyrrhizin low producing strain16.758
DRR006525Leaf Summer glycyrrhizin high producing strain13.663
DRR006526Leaf Summer glycyrrhizin high producing strain13.346

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.560
SRR2868004Drought Stress(Tissue:root)14.582
SRR2967015Control (Tissue:root)16.045

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.734
SRR9715740Leave13.300
SRR9715741Leave9.075
SRR9715739Root6.407
SRR9715742Root10.400
SRR9715743Root11.455

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.588
SRR8749028MeJA induced 9h11.004
SRR8749029MeJA induced 9h10.860
SRR8749030Uninduced5.299
SRR8749031Uninduced5.069
SRR8749032Uninduced6.976

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.757
SRR8400027Control-Root22.786