Gene detail information of Glyur001838s00038464.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G63110.10histone deacetylase 6
NRXP_003525556.10PREDICTED: histone deacetylase 6-like [Glycine max]
COGYP_008089142.13.00E-59Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chthonomonas calidirosea T49]
Swissprottr|Q9FML2|HDA6_ARATH0Histone deacetylase 6
trEMBLtr|I1K037|I1K037_SOYBN0Histone deacetylase {ECO:0000256|PIRNR:PIRNR037913}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold01838574510054+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06067HDAC1_2 EC:3.5.1.98 Notch signaling pathway map04330
Cell cyclemap04110
Thyroid hormone signaling pathwaymap04919
Longevity regulating pathway - multiple speciesmap04213
Pathways in cancermap05200
Transcriptional misregulation in cancersmap05202
Viral carcinogenesismap05203
Chronic myeloid leukemiamap05220
Huntington's diseasemap05016
Alcoholismmap05034
Epstein-Barr virus infectionmap05169


Gene Ontology

biological_process

GO:0016575  histone deacetylation


molecular_function

GO:0004407  histone deacetylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001838s00038464.1PF00850.14Hist_deacetyl463411.20E-79


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.263
SRR1783600control9.556
SRR1783602moderate drought stress7.578
SRR1811619moderate drought stress7.499

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.700
DRR006520Root Summer glycyrrhizin high producing strain14.556
DRR006521Root Winter glycyrrhizin high producing strain79.149
DRR006522Root Winter glycyrrhizin high producing strain76.871
DRR006523Root Summer glycyrrhizin low producing strain21.652
DRR006524Root Summer glycyrrhizin low producing strain21.866
DRR006525Leaf Summer glycyrrhizin high producing strain2.242
DRR006526Leaf Summer glycyrrhizin high producing strain2.198

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.747
SRR2868004Drought Stress(Tissue:root)11.518
SRR2967015Control (Tissue:root)14.081

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.089
SRR9715740Leave3.896
SRR9715741Leave3.885
SRR9715739Root4.360
SRR9715742Root6.894
SRR9715743Root7.417

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h59.325
SRR8749028MeJA induced 9h203.344
SRR8749029MeJA induced 9h255.495
SRR8749030Uninduced62.229
SRR8749031Uninduced144.777
SRR8749032Uninduced174.392

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.855
SRR8400027Control-Root15.493

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved