Gene detail information of Glyur001864s00033368.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G38130.10histone deacetylase 1
NRXP_003543935.10PREDICTED: histone deacetylase 19-like isoform X1 [Glycine max]
COGYP_008089142.13.00E-68Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chthonomonas calidirosea T49]
Swissprottr|O22446|HDA19_ARATH0Histone deacetylase 19
trEMBLtr|I1LWR2|I1LWR2_SOYBN0Histone deacetylase {ECO:0000256|PIRNR:PIRNR037913}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold018643537848923-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06067HDAC1_2 EC:3.5.1.98 Notch signaling pathway map04330
Cell cyclemap04110
Thyroid hormone signaling pathwaymap04919
Longevity regulating pathway - multiple speciesmap04213
Pathways in cancermap05200
Transcriptional misregulation in cancersmap05202
Viral carcinogenesismap05203
Chronic myeloid leukemiamap05220
Huntington's diseasemap05016
Alcoholismmap05034
Epstein-Barr virus infectionmap05169


Gene Ontology

biological_process

GO:0016575  histone deacetylation


molecular_function

GO:0004407  histone deacetylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001864s00033368.1PF00850.14Hist_deacetyl333262.40E-78


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control23.126
SRR1783600control23.253
SRR1783602moderate drought stress19.618
SRR1811619moderate drought stress19.683

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain32.562
DRR006520Root Summer glycyrrhizin high producing strain32.480
DRR006521Root Winter glycyrrhizin high producing strain49.134
DRR006522Root Winter glycyrrhizin high producing strain48.715
DRR006523Root Summer glycyrrhizin low producing strain30.588
DRR006524Root Summer glycyrrhizin low producing strain30.216
DRR006525Leaf Summer glycyrrhizin high producing strain14.786
DRR006526Leaf Summer glycyrrhizin high producing strain14.599

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)67.898
SRR2868004Drought Stress(Tissue:root)59.147
SRR2967015Control (Tissue:root)60.652

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave26.057
SRR9715740Leave25.646
SRR9715741Leave29.706
SRR9715739Root24.195
SRR9715742Root36.011
SRR9715743Root31.799

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h65.941
SRR8749028MeJA induced 9h47.659
SRR8749029MeJA induced 9h41.431
SRR8749030Uninduced18.426
SRR8749031Uninduced13.096
SRR8749032Uninduced19.893

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root44.633
SRR8400027Control-Root47.407

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved