Gene detail information of Glyur001991s00035737.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G60820.31.00E-109N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
NRXP_003532008.11.69E-162PREDICTED: proteasome subunit beta type-1-like [Glycine max]
COGNP_147297.22.00E-22proteasome beta subunit precursor [Aeropyrum pernix K1]
Swissprottr|O82531|PSB1_PETHY3.00E-155Proteasome subunit beta type-1
trEMBLtr|I1KXF0|I1KXF0_SOYBN6.00E-163Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold019911196615570+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02732PSMB1 EC:3.4.25.1 Proteasome map03050


Gene Ontology

biological_process

GO:0051603  proteolysis involved in cellular protein catabolic process


cellular_component

GO:0005839  proteasome core complex


molecular_function

GO:0004175  endopeptidase activity

GO:0004298  threonine-type endopeptidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001991s00035737.1PF00227.21Proteasome132073.00E-35


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control57.489
SRR1783600control56.649
SRR1783602moderate drought stress40.737
SRR1811619moderate drought stress41.509

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain79.104
DRR006520Root Summer glycyrrhizin high producing strain78.410
DRR006521Root Winter glycyrrhizin high producing strain87.488
DRR006522Root Winter glycyrrhizin high producing strain86.013
DRR006523Root Summer glycyrrhizin low producing strain55.951
DRR006524Root Summer glycyrrhizin low producing strain55.763
DRR006525Leaf Summer glycyrrhizin high producing strain56.828
DRR006526Leaf Summer glycyrrhizin high producing strain54.554

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)146.410
SRR2868004Drought Stress(Tissue:root)133.193
SRR2967015Control (Tissue:root)115.921

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave41.622
SRR9715740Leave50.744
SRR9715741Leave49.904
SRR9715739Root38.258
SRR9715742Root41.187
SRR9715743Root43.196

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h128.203
SRR8749028MeJA induced 9h85.587
SRR8749029MeJA induced 9h105.314
SRR8749030Uninduced38.906
SRR8749031Uninduced30.026
SRR8749032Uninduced30.410

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root81.390
SRR8400027Control-Root75.666

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved