Gene detail information of Glyur002052s00038820.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G23650.10calcium-dependent protein kinase 6
NRXP_007160124.10hypothetical protein PHAVU_002G294500g [Phaseolus vulgaris]
COGYP_642814.12.00E-28serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
Swissprottr|Q42479|CDPK3_ARATH0Calcium-dependent protein kinase 3
trEMBLtr|V7CRY2|V7CRY2_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW32118.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold02052740013113-


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:4.2.1


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13412CPK EC:2.7.11.1 Plant-pathogen interaction map04626
Toxoplasmosismap05145


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005509  calcium ion binding

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur002052s00038820.1PF00069.20Pkinase633203.70E-68
Glyur002052s00038820.1PF13499.1EF-hand_73684276.50E-14
Glyur002052s00038820.1PF13499.1EF-hand_74404997.70E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.411
SRR1783600control3.443
SRR1783602moderate drought stress3.436
SRR1811619moderate drought stress3.359

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.853
DRR006520Root Summer glycyrrhizin high producing strain5.824
DRR006521Root Winter glycyrrhizin high producing strain10.646
DRR006522Root Winter glycyrrhizin high producing strain9.998
DRR006523Root Summer glycyrrhizin low producing strain6.521
DRR006524Root Summer glycyrrhizin low producing strain6.739
DRR006525Leaf Summer glycyrrhizin high producing strain7.987
DRR006526Leaf Summer glycyrrhizin high producing strain8.003

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.762
SRR2868004Drought Stress(Tissue:root)9.265
SRR2967015Control (Tissue:root)12.922

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.517
SRR9715740Leave5.863
SRR9715741Leave4.776
SRR9715739Root1.346
SRR9715742Root3.146
SRR9715743Root2.736

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.196
SRR8749028MeJA induced 9h5.195
SRR8749029MeJA induced 9h5.690
SRR8749030Uninduced7.609
SRR8749031Uninduced11.450
SRR8749032Uninduced7.327

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.112
SRR8400027Control-Root5.540

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved