Gene detail information of Glyur002335s00042547.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G08900.1 | 2.00E-111 | arginase |
| NR | AFK41313.1 | 2.86E-148 | unknown [Medicago truncatula] |
| COG | YP_861050.1 | 1.00E-43 | arginase [Gramella forsetii KT0803] |
| Swissprot | tr|P46637|ARGI1_ARATH | 1.00E-144 | Arginase 1, mitochondrial (Precursor) |
| trEMBL | tr|I3SM21|I3SM21_MEDTR | 1.00E-148 | Uncharacterized protein {ECO:0000313|EMBL:AFK41313.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02335 | 32687 | 40489 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01476 | E3.5.3.1, rocF, arg | EC:3.5.3.1 | Biosynthesis of amino acids | map01230 |
| Arginine biosynthesis | map00220 | |||
| Arginine and proline metabolism | map00330 | |||
| Amoebiasis | map05146 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002335s00042547.1 | PF00491.16 | Arginase | 179 | 296 | 2.20E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.321 |
| SRR1783600 | control | 23.769 |
| SRR1783602 | moderate drought stress | 0.191 |
| SRR1811619 | moderate drought stress | 0.125 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.142 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.201 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.540 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.762 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.016 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 86.436 |
| SRR9715740 | Leave | 9.419 |
| SRR9715741 | Leave | 18.115 |
| SRR9715739 | Root | 1.352 |
| SRR9715742 | Root | 0.641 |
| SRR9715743 | Root | 1.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.832 |
| SRR8400027 | Control-Root | 0.205 |