Gene detail information of Glyur003025s00042299.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G40580.23.00E-10720S proteasome beta subunit PBB2
NRXP_004491746.13.19E-145PREDICTED: proteasome subunit beta type-7-B-like [Cicer arietinum]
COGYP_002465863.16.00E-24proteasome beta-type subunit [Methanosphaerula palustris E1-9c]
Swissprottr|Q7DLS1|PSB7B_ARATH9.00E-135Proteasome subunit beta type-7-B (Precursor)
trEMBLtr|I1JJI4|I1JJI4_SOYBN4.00E-144Proteasome subunit beta type {ECO:0000256|RuleBase:RU004203}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold030251224120732-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02739PSMB7 EC:3.4.25.1 Proteasome map03050


Gene Ontology

biological_process

GO:0051603  proteolysis involved in cellular protein catabolic process


cellular_component

GO:0005839  proteasome core complex


molecular_function

GO:0004175  endopeptidase activity

GO:0004298  threonine-type endopeptidase activity

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003025s00042299.1PF00227.21Proteasome14708.80E-17
Glyur003025s00042299.1PF00227.21Proteasome821798.40E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control55.572
SRR1783600control56.230
SRR1783602moderate drought stress30.148
SRR1811619moderate drought stress30.025

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain63.434
DRR006520Root Summer glycyrrhizin high producing strain62.739
DRR006521Root Winter glycyrrhizin high producing strain52.747
DRR006522Root Winter glycyrrhizin high producing strain51.376
DRR006523Root Summer glycyrrhizin low producing strain46.888
DRR006524Root Summer glycyrrhizin low producing strain45.914
DRR006525Leaf Summer glycyrrhizin high producing strain43.722
DRR006526Leaf Summer glycyrrhizin high producing strain43.330

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)135.256
SRR2868004Drought Stress(Tissue:root)113.340
SRR2967015Control (Tissue:root)93.484

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave49.401
SRR9715740Leave53.089
SRR9715741Leave54.676
SRR9715739Root23.875
SRR9715742Root42.189
SRR9715743Root40.147

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h230.464
SRR8749028MeJA induced 9h161.760
SRR8749029MeJA induced 9h206.476
SRR8749030Uninduced85.299
SRR8749031Uninduced84.615
SRR8749032Uninduced77.482

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root96.989
SRR8400027Control-Root91.472

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved