Gene detail information of Glyur004370s00045435.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G08900.1 | 8.00E-65 | arginase |
| NR | AES87364.2 | 1.96E-83 | arginase family protein [Medicago truncatula] |
| COG | YP_591193.1 | 5.00E-19 | agmatinase [Candidatus Koribacter versatilis Ellin345] |
| Swissprot | tr|P46637|ARGI1_ARATH | 2.00E-79 | Arginase 1, mitochondrial (Precursor) |
| trEMBL | tr|G7JFU3|G7JFU3_MEDTR | 7.00E-84 | Arginase family protein {ECO:0000313|EMBL:AES87364.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04370 | 3 | 1787 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01476 | E3.5.3.1, rocF, arg | EC:3.5.3.1 | Biosynthesis of amino acids | map01230 |
| Arginine biosynthesis | map00220 | |||
| Arginine and proline metabolism | map00330 | |||
| Amoebiasis | map05146 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004370s00045435.1 | PF00491.16 | Arginase | 14 | 140 | 3.10E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.505 |
| SRR1783600 | control | 20.371 |
| SRR1783602 | moderate drought stress | 0.051 |
| SRR1811619 | moderate drought stress | 0.353 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.256 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.718 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.770 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.768 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.284 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.141 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.115 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 70.048 |
| SRR9715740 | Leave | 1.853 |
| SRR9715741 | Leave | 11.487 |
| SRR9715739 | Root | 0.503 |
| SRR9715742 | Root | 0.951 |
| SRR9715743 | Root | 1.899 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.364 |
| SRR8400027 | Control-Root | 0.093 |