Gene detail information of Glyur004866s00041621.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G32940.1 | 0 | gamma vacuolar processing enzyme |
| NR | NP_001236564.1 | 0 | vacuolar processing enzyme 2 precursor [Glycine max] |
| COG | YP_004254713.1 | 4.00E-16 | Legumain [Odoribacter splanchnicus DSM 220712] |
| Swissprot | tr|P49044|VPE_VICSA | 0 | Vacuolar-processing enzyme (Precursor) |
| trEMBL | tr|I1M8Z5|I1M8Z5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G10620.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04866 | 5595 | 11472 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01369 | LGMN | EC:3.4.22.34 | Lysosome | map04142 |
| Antigen processing and presentation | map04612 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004866s00041621.1 | PF01650.13 | Peptidase_C13 | 55 | 319 | 4.10E-86 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 67.587 |
| SRR1783600 | control | 67.038 |
| SRR1783602 | moderate drought stress | 32.969 |
| SRR1811619 | moderate drought stress | 32.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 408.289 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 403.462 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 192.796 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 184.135 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1842.900 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1827.550 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 61.570 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 60.655 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 153.275 |
| SRR2868004 | Drought Stress(Tissue:root) | 226.020 |
| SRR2967015 | Control (Tissue:root) | 307.755 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 48.615 |
| SRR9715740 | Leave | 98.381 |
| SRR9715741 | Leave | 128.003 |
| SRR9715739 | Root | 72.874 |
| SRR9715742 | Root | 139.993 |
| SRR9715743 | Root | 129.724 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.251 |
| SRR8749028 | MeJA induced 9h | 45.419 |
| SRR8749029 | MeJA induced 9h | 17.008 |
| SRR8749030 | Uninduced | 4.866 |
| SRR8749031 | Uninduced | 8.544 |
| SRR8749032 | Uninduced | 12.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 161.654 |
| SRR8400027 | Control-Root | 188.507 |